Research Project Portals

Andrey Shevchenko

Researcher

I am working in the Theodosius Dobzhansky Center for Genome Bioinformatics SPSU in a field of population genetics, human and animal genetics, HIV/AIDS from 2012.

Research Experience:

2010-2012 – junior research fellow, the Biomedical Center, St. Petersburg, Russia. 2009-2010 – junior research fellow, Laboratory of Molecular Virology, Institute of Highly Pure Biopreparations, St. Petersburg, Russia. 2007-2008 – trainee, the Biomedical Center, St. Petersburg, Russia. 2006-2007 – trainee, department of advanced medical biological technologies, Military Medical Academy, St. Petersburg, Russia.

Education:

2009– M.S., Department of Microbiology, St. Petersburg State University, St. Petersburg, Russia. Diploma thesis: “Analysis of intrapatient genetic diversity of HIV viral population in acute HIV infection”. 2007 – B.S., Department of Microbiology, St. Petersburg State University, St. Petersburg, Russia. Diploma thesis: “Epitope mapping of Treponema pallidum p17 antigen using synthetic peptides”.

List of publications:

1. Xie W, Agniel D, Shevchenko A, Malov SV, Svitin A, Cherkasov N, Baum MK, Campa A, Gaseitsiwe S, Bussmann H, Makhema J, Marlink RG, Novitsky V, Lee TH, Cai T, O’Brien SJ, Essex M. Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa. AIDS Res Hum Retroviruses 2017 Jan 28. doi: 10.1089/AID.2016.0017.

2. Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, Sezgin E, Van Natta M, Harrigan PR, Brumme ZL, O’Brien SJ. (2014). GWATCH: a web platform for automated gene association discovery analysis. GigaScience, 3, 18. doi:10.1186/2047-217X- 3-18

3. Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alexey Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus- Peter Koepfli, Joan Pontius, Carlos A Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belen Lorente-Galdos, Can Alkan, Tomas Marques-Bonet, Marylin Menotti-Raymond, Victor A David, Kristina Narfström and Stephen J O’Brien. Annotated features of domestic cat – Felis catus genome. 
GigaScience. 2014, 3:13 doi:10.1186/2047-217X-3-13.

4. Sergey V. Malov, Andrey K. Shevchenko, Stephen J. O’Brien. Genome Associations Discovery. Part 2: Multiple Testing Problem, Computer Tools and Applications. Computer Methods in Education. ISSN: 2071-2340, 2013,-No6,-p.3-17.

5. Sergey V. Malov, Andrey K. Shevchenko, Stephen J. O’Brien. Genome Associations Discovery. Part 1: Statistical Method. Computer Methods in Education. ISSN: 2077-7647, 2013,-No5,-p17-32.

6. Shevchenko A.K., Verevochkin S.V., Masharsky A.E., Dukhovlinova E.N., Olshansky A.Ya., Mazus A.I., Kozlov A.P. The search of acute and early HIV infection cases. Abstracts of 19-th International Conference “AIDS, cancer and public health”, 2010, St. Petersburg, Russia. Russian Journal of AIDS, cancer and public health.-2010.-V.14.-No1.-p.40.

7. Verevochkin S.V., Gagarina S.Yu., Shevchenko A.K., Skochilov R.V., Shaboltas A.V., Toussova O.V., Kozlov A.P. Prevalence and incidence of HIV infection among IDUs in St. Petersburg, Russia. Abstracts of 19-th International Conference “AIDS, cancer and public health”, 2010, St. Petersburg, Russia. Russian Journal of AIDS, cancer and public health.- 2010.-V.14.-No1.-p.57-58

Theodosius Dobzhansky

Geneticist & Evolutionary Biologist
 
Theodosius Dobzhansky American geneticist and evolutionary biologist and a central figure in the field of evolutionary biology is recognized for...

Stephen J O'Brien

Chief Scientific Officer
 
I welcome you to the Site of the brand new Center of Genome Informatics at St Petersburg State University. The...

Vladimir Brukhin

Leading researcher, Deputy Director 
 
Vladimir Brukhin    Leading researcher, Deputy Director  Joined the Theodosius Dobzhansky Center for Genome Bioinformatics in February 2013 right after returning...

Lab's news

SPBU on web site published an article about achievement of the Center and published article.

September, 27 2019 ( Friday at 2pm: Dr. Kirill Vinnikov from Hawaii University (USA) and head of the lab at the Far Eastern Federal University (Vladivostok) "Exome sequencing of non-model species"