Research Project Portals

Объединенный Семинар Центра и Лаборатории алгоритмической биологии Agenda
May 31
10:00am Meet at Ozerki station for the bus
12:00pm Check in and looking around
01:45 - 02:00 Steve O'Brien Opening speech
02:00 - 02:40 Nikolay Vyahhi and Andrei Balandin Open Science and Online Education in Bioinfirmatics
02:40 - 03:40 Lunch
03:40 - 04:00Ekaterina Chernyaeva Whole Genome Sequencing of Russian Mycobacterium tuberculosis strains
04:00 - 04:20Serguei Simonov GBrowser as a tool for genome information integration
04:20 - 04:40Andrey Prjibelski Simple and reliable approach for using multiple paired - end and mate - pair libraries.
04:40 - 05:00 Ira Vasilinec Filtering out erroneous read - pair information.
05:00 - 05:20Kira Vyatkina Comparative analysis of strategies for de novo antibody sequencing
05:20 - 05:40Stephen J. O’Brien Cat genome projects overview
05:40 - 06:00Alex Makunin Construction of high - density genetic linkage map in domestic cat
06:00 - 06:20Anton Logachev Analysis of the repetitive elements in domestic cat (Felis catus) genome
06:20 - 07:00am Break and free time
07:00 - 09:00Dinner
June 1
07:30 - 10:00 Breakfast and free time
10:00 - 10:20Pavel Dobrynin Cheetah genome
10:20 - 10:40Valentin Fondaratov Comparative analysis project
10:40 - 11:00Sergey Nurk Chimeric edge detection in de Bruijn graphs using max - flow algorithm
11:00 - 11:20Anton Bankevich Using MDA artifact analisys to improve genome assembly
11:20 - 11:40Ksenia Krasheninnikova Use of uneven read coverage depth in bacterial single - cell repeat resolution
11:40 - 12:00Alexey Gurevich Quast: new frontiers.
12:00 - 12:20pm Break
12:20 - 12:40Olga Bazhenova Gene expression profiling of colon cancer cells by RNA sequencing.
12:40 - 01:00Anton Svitin It’s GWATCH time: the wealth of human SNPs clinical significance just a click away.
01:00 - 01:20Andrey Shevchenko CCR5 - gene mutation and plague. Role of infections in the gene selection
01:20 - 01:40Alla Lapidus SPAdes: Assembling microbes in the cloud
01:40 - 02:00Vladimir Bryukhin Genome methylation and its role in organism plasticity
02:00 - 03:00 Lunch
03:00 - 03:20Anna Gonchar Mechanical regulation of complex life cycles (Cnidaria, Trematods)
03:20 - 03:40Sergey Malov On survival data analysis in genome association study and AIDS research
03:40 - 04:00Aleksey Antonik Recent Developments in Coverage Problem
04:00 - 04:20Dmitry Antipov SPAdes and hybrid genome assembly/Assembly postprocessing in SPAdes.
04:20 - 04:40Gaik Tamazian Optimization model for protein conformational motion simulation
04:40 - Break and free time
07:00 Gala dinner
June 2
7:30 - 10:00 Breakfast and Check out
10:00 - 10:20Yana Safonova NGS assembly of highly polymorphic diploid genomes
10:20 - 10:40Vladislav Saveljev Meta - SPAdes
10:40 - 11:00Mikhail Rotkevich Development of а mycobacterium tuberculosis SNP database
11:00 - 11:20 break
11:20 - 11:40Nikolay Cherkasov
11:40 - 12:00Guan Li Examples for cohort development at population - based disease gene discovery
12:00 - 12:20 Stephen J. O'Brien Closing speech
12:20 - 03:00 Lunch and free time
03:15 pm Meet for the bus


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Феодосий Григорьевич Добржанский, советский и американский генетик российского происхождения, энтомолог, один из основателей синтетической теории эволюции.

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На сайте СПбГУ опубликована статья о проекте. Статья посвящена научной публикации сотрудников Центра.

10.07.2019 в 15-00. Alexander Tiskin (Department of Computer Science, University of Warwick, United Kingdom) "The surprising algebra of sequence alignment".