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Публикации 2014

  1. Bajenova O, Chaika N, Tolkunova E, Davydov-Sinitsyn A, Gapon S, Thomas P, O’Brien S. Carcinoembryonic antigen promotes colorectal cancer progression by targeting adherens junction complexes. Exp Cell Res. 2014;324:115-23. doi: 10.1016/j.yexcr.2014.04.007.

  2. Bajenova, O.; O’Brien, S. J. GENETIC FACTORS INVOLVED IN HUMAN COLORECTAL CANCER METASTASIS. ANTICANCER RESEARCH : 34 : 5824-5825 2014

  3. Chernyaeva, E. , M. Shulgina, M.Rotkevich, P. Dobrynin, S. Simonov, E. Shitikov, D. Ischenko, I. Karpova, E. Kostryukova, E. Ilina, V. Govorun, V. Zhuravlev, O. Manicheva, P. Yablonsky, Y. Isaeva, E. Nosova, I. Mokrousov, O. Narvskaya, A. Vyazovaya, A. Lapidus, S. J. O’Brien Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology BMC GENOMICS Volume: 15 Article Number: 308 . 2014

  4. David, Victor A. , Marilyn Menotti-Raymond, Andrea Coots Wallace, Melody Roelke, James Kehler‡, Robert Leighty, Eduardo Eizirik, Steven S. Hannah, George Nelson, Alejandro A. Schäffer, Catherine J. Connelly, Stephen J. O’Brien, David K. Ryugo Endogenous Retrovirus Insertion in KIT Oncogene Determines White , White Spotted and White Deafness in Domestic cats . G3-Genes Genomes Genetics: 4:1881-1891 2014

  5. A. P. Davydov-Sinitsyn, O. V. Bajenova, M.A. Liskova, S.V. Ponomartsev., I.V.Rykov, S.A.Koshkin, A.N. Tomilin, E.N. Tolkunova. Подавление роста опухолей , полученных при ксенотрансплантации клеток аденокарциномы толстой кишки человека Tsitologia

  6. GIGA-Community of Scientists*, Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes Submitted Jour Heredity 2014, 105: 1-18 .

  7. Guo, Xiuchan, Cheryl A. Winkler, Ji Li, Li Guan, Minzhong Tang, Jian Liao, Hong Deng, Guy de Thé, Yi Zeng and Stephen J. OʹBrien . Evaluation and integration of genetic signature for Prediction Risk of Nasopharyngeal Carcinoma in Southern China. BIOMED RESEARCH INTERNATIONAL Article Number: 434072, 2014.

  8. Jarvis, Erich D.,et al Whole Genome Analyses Resolve the Early Branches in the Tree of Life of Modern Birds. Science In press. 2014.

  9. Jiang X, Peery A, Hall AB, Sharma A, Chen X, Waterhouse RM, Komissarov A, Riehle MM, Shouche Y, Sharakhova MV, Lawson D, Pakpour N, Arensburger P, Davidson V, Eiglmeier K, Emrich S, George P, Kennedy R, Mane SP, Maslen G, Oringanje C, Qi Y, Settlage R, Tojo M, Tubio JM, Unger M, Wang B, Vernick KD, Ribeiro JM, James AA, Michel K, Riehle MA, Luckhart S, Sharakhov IV, Tu Z. Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi Genome Biology 2014, 15:459 doi:10.1186/s13059-014-0459-2

  10. Khan, Imran , Emanuel Maldonado, Vítor Vasconcelos, Stephen J. O’Brien,Warren E. Johnson and Agostinho Antunes. Mammalian keratin associated proteins (KRTAPs)subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments. BMC Genomic: 15: Article Number: UNSP 779. 2014.

  11. Kuznetsova IS, Thevasagayam NM, Sridatta PS, Komissarov AS, Saju JM, Ngoh SY, Jiang J, Shen X, Orban L.Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Front Genet. 2014 Jul 25;5:223. doi: 10.3389/fgene.2014.00223.

  12. Liang Y, Tang W, Huang T, Gao Y, Tan A, Yang X, Zhang H, Hu Y, Qin X, Li S, Zhang S, Mo L, Liang Z, Shi D, Huang Z, Guan Y, Zhou J, Winkler C, O’Brien SJ, Xu J, Mo Z, Peng T. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. PLoS One. 2014 Jun 18;9(6):e97923.

  13. Luo SJ, Zhang Y, Johnson WE, Miao L, Martelli P, Antunes A, Smith JL, O’Brien SJ. Sympatric Asian felid phylogeography reveals a major Indochinese-Sundaic divergence. Mol Ecol. 2014 Apr;23(8):2072-92. doi: 10.1111/mec.12716.PMID: 24629132
  14. Malov S.V., Shevchenko, A.K. & O’Brien S.J. (2013) Genome associations discovering. Part 1: Statistical methods (in Russian). Komputerniye instrumenti v obrazovanii, Computer Tools in Education v. 5, pp 17 – 32.

  15. Malov S.V., Shevchenko, A.K. & O’Brien S.J. (2013). Genome associations discovering. Part 2: Multiple testing problem, Computer Tools and Applications (in Russian). Komputerniye instrumenti v obrazovanii, Computer Tools in Education v. 6, pp. 3-17

  16. Menotti-Raymond, M., David, A. V., O´Brien, S. J., Kanthaswamy, S., Projić, P., Škaro V., Lauc, G., “STR Based Forensic Animal DNA Analysis”, Chapt. 11 , Forensic DNA Applications: An Interdisciplinary Perspective. Editors. Dragan Primorac and Moses Schanfield, CRC Press Taylor and Francis, 2014

  17. Morris KM, Kirby K, Beatty JA, Barrs VR, Cattley S, David V, O’Brien SJ, Menotti-Raymond M, Belov K. Development of MHC-linked microsatellite markers in the domestic cat and their use to evaluate MHC diversity in Domestic cats, cheetahs and Gir lions. Jour Heredity 105:493-505, 2014

  18. Montague, Michael J. , Gang Li, Barbara Gandolfi, Razib Khan, Bronwen Aken, Steve Searle, Patrick Minx, LaDeana Hillier, Dan Kolboldt, Brian W. Davis, Carlos A. Driscoll , Christina Barr, Kevin Blackistone, Javier Quilez Oliete7, Maria Belen Lorente Galdos, Tomas Marques-Bonet, Can Alkan , Gregg W.C. Thomas, Matthew W. Hahn, Marilyn Menotti-Raymond, Stephen J. O’Brien, Leslie A. Lyons, William J. Murphy, Richard K. Wilson, Wesley C. Warren. Comparative analysis of the domestic cat genome reveals genetic signatures of selection underlying feline biology and domestication. Proc Natl Acad Sci 111: 17230-17235.

  19. Napolitano, Constanza ,Warren E. Johnson, Jim Sanderson, Stephen J. O’Brien, A. Rus Hoelzel, Rachel Freer, Nigel Dunstone, Kermit Ritland, Carol E. Ritland, Elie Poulin Phylogeography and population history of Leopardus guigna, the smallest American felid. Conservation Genetics 15: 631-653 2014.

  20. O’Brien, Stephen J . ,Anton Svitin, Sergey Malov, Nikolay Cherkazov Pavel Dobrynin, Paul Geerts, Jennifer Troyer, Sher Hendrickson-Lambert, Efe Sezgin, Holli Hutcheson.Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES Volume: 65 Supplement: 2 Pages: 59-59 2014

  21. O’Brien, SJ, The “Exotic Aliens” Controversy- A View from Afar. Journal of the Bombay Natural History Society 110:108-113 2014.

  22. OBrien , Stephen J., David Haussler and Oliver Ryder . The Birds of Genome10K GigaScience 2014, 3:32 http://www.gigasciencejournal.com/content/3/1/32.

  23. Pereira , J ,Johnson W., O’Brien S., Jarvis E., Zhang G., Gilbert M., Vasconcelos V., Antunes A. Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (SHH, IHH AND dHH) in Vertebrates. PLOSONE 2014 Volume: 9 Issue: 12 Article Number: e74132 Published: DEC 30 2014.

  24. Pershina, E. V., A. S. Dolnik, G. S. Tamazyan, K. V. Vyatkina, Y. B. Porozov, A. G. Pinaev, S. O. Karimov, N. A. Provorov, and E. E. Andronov. «The Evolutionary Space Model to be Used for the Metagenomic Analysis of Molecular and Adaptive Evolution in the Bacterial Communities.» In Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, pp. 339-355. Springer International Publishing, 2014.

  25. Svitin Anton, Malov Sergey, Cherkasov Nikolay, Geerts Paul, Rotkevich Mikhail, Dobrynin Pavel, Shevchenko Andrey, Guan Li, Troyer Jennifer, Hendrickson Sher, Hutcheson Dilks Holli, Oleksyk K. Taras, Donfield Sharyne, Gomperts Edward, Jabs A. Douglas, Sezgin Efe, Van Natta Mark, Harrigan P. Richard, Brumme L. Zabrina, O’Brien Stephen J. GWATCH: a web platform for automated gene association discovery analysis. (2014 ) GigaScience 3:18.

  26. Tamazian, T; Simonov, S; Dobrynin, P; Makunin, A; Logachev, A; Komissarov, A; Shevchenko, A; Brukhin, V; Cherkasov, N; Svitin, A; Koepfli, KP; Pontius, J; Driscoll, CA; Blackistone, K; Barr, C; Goldman, D; Antunes, A; Quilez, J; Lorente-Galdos, B; Alkan, C; Marques-Bonet, T; Menotti-Raymond, M; David, V; Narfstrom, K; O’Brien, SJ (2014): Annotated Features of the Domestic Cat (Felis catus) Genome. GigaScience 3:13 . doi:10.1186/2047-217X-3-13
    http://www.gigasciencejournal.com/content/3/1/13 2014

  27. Vasilyeva I.N., Bespalov V.G., Semenov A.L., Ivanov S.D., Komissarov A.S., Podgornaya O.I. Секвенирование внеклеточной нуклеосомной ДНК крови облученных крыс. Molekulyarnaya diagnostika 2014, 2014, p. 278

  28. Walters-Conte KB, Johnson DL, Johnson WE, O’Brien SJ, Pecon-Slattery J. The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms. BMC Evol Biol. 2014. 14:137.

  29. Xue, Hao-Ran Nobuyuki Yamaguchi, Carlos A. Driscoll, Yu Han, Gila Kahila Bar-Gal, Yan Zhuang, David W. Macdonald, Stephen J. O’Brien, Shu-Jin Luo, Genetic Ancestry of the Presumed Extinct Javan and Balinese Tigers Inform a Refinement of Tiger Subspecies Taxonomy PLOS-Biology Submitted Journal of Hered. 2014

  30. 124. Yim HS, Cho YS, Guang X, Kang SG, Jeong JY, Cha SS, Oh HM, Lee JH, Yang EC, Kwon KK, Kim YJ, Kim TW, Kim W, Jeon JH, Kim SJ, Choi DH, Jho S, Kim HM, Ko J, Kim H, Shin YA, Jung HJ, Zheng Y, Wang Z, Chen Y, Chen M, Jiang A, Li E, Zhang S, Hou H, Kim TH, Yu L, Liu S, Ahn K, Cooper J, Park SG, Hong CP, Jin W, Kim HS, Park C, Lee K, Chun S, Morin PA, O’Brien SJ, Lee H, Kimura J, Moon DY, Manica A, Edwards J, Kim BC, Kim S, Wang J, Bhak J, Lee HS, Lee JH. Minke whale genome and aquatic adaptation in cetaceans. Nat Genet. 46:88-92.( 2014). doi: 10.1038/ng.2835.

  31. 125. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O’Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J; Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014 Dec 12;346(6215):1311-20. doi: 10.1126/science.1251385. Epub 2014 Dec 11.MS782