THEODOSIUS DOBRZHANSKY CENTER FOR GENOME BIOINFORMATICS,
ST. PETERSBURG STATE UNIVERSITY & ACADEMIC UNIVERSITY RETREAT
29-30 May 2015, PETROVSKY HALL THE TWELVE COLLEGIA BUILDING
RETREAT OF DOBZHANSKY CENTER
12 Colleges
May 29-30, 2015
| FRIDAY 29 MAY | |||
|---|---|---|---|
| Section chair: Ekaterina Chernyaeva | |||
| 09:15-09:30 | Stephen O'Brien | WELCOME | |
| 09:30-09:50 | Ksenia Krasheninnikova | Dobzhansky Center | Comparative analysis of the Sable antelope genome |
| 09:50-10:10 | Anton Bankevich | CAB | Application of TruSeq technology for metagenomics and structural variation detection |
| 10:10-10:30 | Aleksey Komissarov | Dobzhansky Center | Genome annotation from jellyfish to jaguar genomes |
| 10:30-10:50 | Mike Rayko | Dobzhansky Center | Pangolin genome project |
| 10:50-11:20 | COFFEE BREAK | ||
| Section chair: OlgaBajenova | |||
| 11:20-11:40 | Igor Evsyukov | Dobzhansky Center | Searching for genes involved in CEA-producing colorectal cancer cell metastasis using RNA-sequencing method |
| 11:40-12:00 | Anna Gorbunova | Dobzhansky Center | GWATCH platform: Southern China nasopharyngeal carcinoma genome-wide association study |
| 12:00-12:20 | Sergey Malov | Dobzhansky Center | On an extended actuarial estimator for categorical survival data and its applications |
| 12:20-12:40 | Alexey Antonik | Dobzhansky Center | A toolset for density and regions with small p-value computation: description and programming chalenges |
| 12:40-14:00 | LUNCH | ||
| Section chair: SergeyMalov | |||
| 14:00-14:20 | Ekaterina Chernyaeva | Dobzhansky Center | Study of M. tuberculosis genomes spread in Russia |
| 14:20-14:40 | Andrey Prjibelski | CAB | rnaSPAdes: yet another genome assembler modified for RNA-Seq |
| 14:40-15:00 | Anton Logachev | Dobzhansky Center | Search and verification of Repetitive Elements in large and small eukaryotic genomes |
| 15:00-15:20 | Nataliia Katolikova | Raul Gainetdinov's team | Direct reprogramming of GABAergic neurons into dopaminergic neurons for treatment of Parkinson disease |
| 15:20-15:50 | COFFEE BREAK | ||
| Section chair: Anna Gorbunova | |||
| 15:50-16:10 | Olga Bajenova | Dobzhansky Center | Signaling involved in colorectal cancer liver metastasis induced by CEA |
| 16:10-16:30 | Kirill Grigorev | Dobzhansky Center | TBA |
| 16:30-16:50 | Aleksey Komissarov | Dobzhansky Center | Moving forward to Steve annotation (part 2) |
| SATURDAY 30 MAY | |||
| Section chair: Vladimir Brukhin | |||
| 9:30-9:50 | Anton Svitin | Dobzhansky Center | GWATCH: untangling disease-gene associations |
| 9:50-10:10 | Andrey Shevchenko | Dobzhansky Center | Replication in Genome-Wide Association Studies in the two Botswana cohorts |
| 10:10-10:30 | Gaik Tamazian | Dobzhansky Center | Botswana population whole-genome study |
| 10:30-10:50 | Stephen O'Brien | Dobzhansky Center | My Three research agendas for 2015!!! |
| 10:50-11:20 | COFFEE BREAK | ||
| Section chair: Anton Svitin | |||
| 11:20-11:40 | Vladimir Brukhin | Dobzhansky Center | Genome Russia: Goals, Strategy and Challenges |
| 11:40-12:00 | Nikolay Cherkasov | Dobzhansky Center | IT environment of Genome Russia Project |
| 12:00-12:20 | Mikhail Rotkevich | Dobzhansky Center | Database for Genome Russia Project: Thoughts and Plans |
| 12:20-12:40 | Serguei Simonov | Dobzhansky Center | Security and Confidentiality of Genomic Information |
| 12:40-14:00 | LUNCH | ||
| Section chair: Ksenia Krasheninnikova | |||
| 14:00-15:00 | Jose Lopez | NOVA Uinversity | KEYNOTE LECTURE: Lessons from the Deepwater Horizon Oil Spill in the Gulf of Mexico |
| 15:00-15:20 | Andrey Yurchenko | Dobzhansky Center | HGT signatures in Mycobacterium Tuberculosis |
| 15:20-15:40 | Pavel Dobrynin | Dobzhansky Center | Genomic Legacy of the African Cheetah, Acinonyx jubatus |
| 15:40-16:10 | COFFEE BREAK | ||
| Section chair: Andrey Yurchenko | |||
| 16:10-16:30 | Sergey Nurk | CAB | SPArcle tool for detection of large variants in bacterial genomes |
| 16:30-16:50 | Sofiia Kolchanova | Dobzhansky Center | Caribbean Parrots genomes project |
| 16:50-17:10 | Vladimir Krasikov | Dobzhansky Center | Association of levels of biochemical markers with observed genotypes in cohort of healthy individuals of Chinese origin |
| 17:10-17:30 | Stephen O'Brien | Dobzhansky Center | TBA / Closing notes |
| 19:00 | Gala at Karl and Friedrick's | ||
Picture gallery
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Theodosius Dobzhansky
American geneticist and evolutionary biologist and a central figure in the field of evolutionary biology is recognized for...
I welcome you to the Site of the brand new Center of Genome Informatics at St Petersburg State University. The...
Vladimir Brukhin
Leading researcher, Deputy Director
Joined the Theodosius Dobzhansky Center for Genome Bioinformatics in February 2013 right after returning...