THEODOSIUS DOBRZHANSKY CENTER FOR GENOME BIOINFORMATICS,
ST. PETERSBURG STATE UNIVERSITY & ACADEMIC UNIVERSITY RETREAT
29-30 May 2015, PETROVSKY HALL THE TWELVE COLLEGIA BUILDING
RETREAT OF DOBZHANSKY CENTER
12 Colleges
May 29-30, 2015
| FRIDAY 29 MAY | |||
|---|---|---|---|
| Section chair: Ekaterina Chernyaeva | |||
| 09:15-09:30 | Stephen O'Brien | WELCOME | |
| 09:30-09:50 | Ksenia Krasheninnikova | Dobzhansky Center | Comparative analysis of the Sable antelope genome |
| 09:50-10:10 | Anton Bankevich | CAB | Application of TruSeq technology for metagenomics and structural variation detection |
| 10:10-10:30 | Aleksey Komissarov | Dobzhansky Center | Genome annotation from jellyfish to jaguar genomes |
| 10:30-10:50 | Mike Rayko | Dobzhansky Center | Pangolin genome project |
| 10:50-11:20 | COFFEE BREAK | ||
| Section chair: OlgaBajenova | |||
| 11:20-11:40 | Igor Evsyukov | Dobzhansky Center | Searching for genes involved in CEA-producing colorectal cancer cell metastasis using RNA-sequencing method |
| 11:40-12:00 | Anna Gorbunova | Dobzhansky Center | GWATCH platform: Southern China nasopharyngeal carcinoma genome-wide association study |
| 12:00-12:20 | Sergey Malov | Dobzhansky Center | On an extended actuarial estimator for categorical survival data and its applications |
| 12:20-12:40 | Alexey Antonik | Dobzhansky Center | A toolset for density and regions with small p-value computation: description and programming chalenges |
| 12:40-14:00 | LUNCH | ||
| Section chair: SergeyMalov | |||
| 14:00-14:20 | Ekaterina Chernyaeva | Dobzhansky Center | Study of M. tuberculosis genomes spread in Russia |
| 14:20-14:40 | Andrey Prjibelski | CAB | rnaSPAdes: yet another genome assembler modified for RNA-Seq |
| 14:40-15:00 | Anton Logachev | Dobzhansky Center | Search and verification of Repetitive Elements in large and small eukaryotic genomes |
| 15:00-15:20 | Nataliia Katolikova | Raul Gainetdinov's team | Direct reprogramming of GABAergic neurons into dopaminergic neurons for treatment of Parkinson disease |
| 15:20-15:50 | COFFEE BREAK | ||
| Section chair: Anna Gorbunova | |||
| 15:50-16:10 | Olga Bajenova | Dobzhansky Center | Signaling involved in colorectal cancer liver metastasis induced by CEA |
| 16:10-16:30 | Kirill Grigorev | Dobzhansky Center | TBA |
| 16:30-16:50 | Aleksey Komissarov | Dobzhansky Center | Moving forward to Steve annotation (part 2) |
| SATURDAY 30 MAY | |||
| Section chair: Vladimir Brukhin | |||
| 9:30-9:50 | Anton Svitin | Dobzhansky Center | GWATCH: untangling disease-gene associations |
| 9:50-10:10 | Andrey Shevchenko | Dobzhansky Center | Replication in Genome-Wide Association Studies in the two Botswana cohorts |
| 10:10-10:30 | Gaik Tamazian | Dobzhansky Center | Botswana population whole-genome study |
| 10:30-10:50 | Stephen O'Brien | Dobzhansky Center | My Three research agendas for 2015!!! |
| 10:50-11:20 | COFFEE BREAK | ||
| Section chair: Anton Svitin | |||
| 11:20-11:40 | Vladimir Brukhin | Dobzhansky Center | Genome Russia: Goals, Strategy and Challenges |
| 11:40-12:00 | Nikolay Cherkasov | Dobzhansky Center | IT environment of Genome Russia Project |
| 12:00-12:20 | Mikhail Rotkevich | Dobzhansky Center | Database for Genome Russia Project: Thoughts and Plans |
| 12:20-12:40 | Serguei Simonov | Dobzhansky Center | Security and Confidentiality of Genomic Information |
| 12:40-14:00 | LUNCH | ||
| Section chair: Ksenia Krasheninnikova | |||
| 14:00-15:00 | Jose Lopez | NOVA Uinversity | KEYNOTE LECTURE: Lessons from the Deepwater Horizon Oil Spill in the Gulf of Mexico |
| 15:00-15:20 | Andrey Yurchenko | Dobzhansky Center | HGT signatures in Mycobacterium Tuberculosis |
| 15:20-15:40 | Pavel Dobrynin | Dobzhansky Center | Genomic Legacy of the African Cheetah, Acinonyx jubatus |
| 15:40-16:10 | COFFEE BREAK | ||
| Section chair: Andrey Yurchenko | |||
| 16:10-16:30 | Sergey Nurk | CAB | SPArcle tool for detection of large variants in bacterial genomes |
| 16:30-16:50 | Sofiia Kolchanova | Dobzhansky Center | Caribbean Parrots genomes project |
| 16:50-17:10 | Vladimir Krasikov | Dobzhansky Center | Association of levels of biochemical markers with observed genotypes in cohort of healthy individuals of Chinese origin |
| 17:10-17:30 | Stephen O'Brien | Dobzhansky Center | TBA / Closing notes |
| 19:00 | Gala at Karl and Friedrick's | ||
Picture gallery
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Theodosius Dobzhansky
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