Research Project Portals

THEODOSIUS DOBRZHANSKY CENTER FOR GENOME BIOINFORMATICS,

ST. PETERSBURG STATE UNIVERSITY & ACADEMIC UNIVERSITY RETREAT

29-30 May 2015, PETROVSKY HALL THE TWELVE COLLEGIA BUILDING

RETREAT OF DOBZHANSKY CENTER
12 Colleges
May 29-30, 2015

FRIDAY 29 MAY
Section chair: Ekaterina Chernyaeva
09:15-09:30 Stephen O'Brien WELCOME
09:30-09:50 Ksenia Krasheninnikova Dobzhansky Center Comparative analysis of the Sable antelope genome
09:50-10:10 Anton Bankevich CAB Application of TruSeq technology for metagenomics and structural variation detection
10:10-10:30 Aleksey Komissarov Dobzhansky Center Genome annotation from jellyfish to jaguar genomes
10:30-10:50 Mike Rayko Dobzhansky Center Pangolin genome project
10:50-11:20 COFFEE BREAK
Section chair: OlgaBajenova
11:20-11:40 Igor Evsyukov Dobzhansky Center Searching for genes involved in CEA-producing colorectal cancer cell metastasis using RNA-sequencing method
11:40-12:00 Anna Gorbunova Dobzhansky Center GWATCH platform: Southern China nasopharyngeal carcinoma genome-wide association study
12:00-12:20 Sergey Malov Dobzhansky Center On an extended actuarial estimator for categorical survival data and its applications
12:20-12:40 Alexey Antonik Dobzhansky Center A toolset for density and regions with small p-value computation: description and programming chalenges
12:40-14:00 LUNCH
Section chair: SergeyMalov
14:00-14:20 Ekaterina ChernyaevaDobzhansky Center Study of M. tuberculosis genomes spread in Russia
14:20-14:40 Andrey Prjibelski CAB rnaSPAdes: yet another genome assembler modified for RNA-Seq
14:40-15:00 Anton Logachev Dobzhansky Center Search and verification of Repetitive Elements in large and small eukaryotic genomes
15:00-15:20 Nataliia Katolikova Raul Gainetdinov's teamDirect reprogramming of GABAergic neurons into dopaminergic neurons for treatment of Parkinson disease
15:20-15:50 COFFEE BREAK
Section chair: Anna Gorbunova
15:50-16:10 Olga Bajenova Dobzhansky Center Signaling involved in colorectal cancer liver metastasis induced by CEA
16:10-16:30 Kirill Grigorev Dobzhansky Center TBA
16:30-16:50 Aleksey Komissarov Dobzhansky Center Moving forward to Steve annotation (part 2)
SATURDAY 30 MAY
Section chair: Vladimir Brukhin
9:30-9:50 Anton Svitin Dobzhansky Center GWATCH: untangling disease-gene associations
9:50-10:10 Andrey Shevchenko Dobzhansky Center Replication in Genome-Wide Association Studies in the two Botswana cohorts
10:10-10:30 Gaik Tamazian Dobzhansky Center Botswana population whole-genome study
10:30-10:50 Stephen O'Brien Dobzhansky Center My Three research agendas for 2015!!!
10:50-11:20 COFFEE BREAK
Section chair: Anton Svitin
11:20-11:40 Vladimir Brukhin Dobzhansky Center Genome Russia: Goals, Strategy and Challenges
11:40-12:00 Nikolay Cherkasov Dobzhansky Center IT environment of Genome Russia Project
12:00-12:20 Mikhail Rotkevich Dobzhansky Center Database for Genome Russia Project: Thoughts and Plans
12:20-12:40 Serguei Simonov Dobzhansky Center Security and Confidentiality of Genomic Information
12:40-14:00 LUNCH
Section chair: Ksenia Krasheninnikova
14:00-15:00 Jose Lopez NOVA Uinversity KEYNOTE LECTURE: Lessons from the Deepwater Horizon Oil Spill in the Gulf of Mexico
15:00-15:20 Andrey Yurchenko Dobzhansky Center HGT signatures in Mycobacterium Tuberculosis
15:20-15:40 Pavel Dobrynin Dobzhansky Center Genomic Legacy of the African Cheetah, Acinonyx jubatus
15:40-16:10 COFFEE BREAK
Section chair: Andrey Yurchenko
16:10-16:30 Sergey Nurk CAB SPArcle tool for detection of large variants in bacterial genomes
16:30-16:50 Sofiia Kolchanova Dobzhansky Center Caribbean Parrots genomes project
16:50-17:10 Vladimir Krasikov Dobzhansky Center Association of levels of biochemical markers with observed genotypes in cohort of healthy individuals of Chinese origin
17:10-17:30 Stephen O'Brien Dobzhansky Center TBA / Closing notes
19:00 Gala at Karl and Friedrick's

 

Picture gallery

[Best_Wordpress_Gallery id="9" gal_title="retreat2015may"]

Theodosius Dobzhansky

Geneticist & Evolutionary Biologist
 
Theodosius Dobzhansky American geneticist and evolutionary biologist and a central figure in the field of evolutionary biology is recognized for...

Heads of the Center

Anastasia Samsonova

Professor, Head of the Centre

Publications


Alexander Kanapin

Professor, co-Head of the Centre

Publications

Stephen J O'Brien

Chief Scientific Officer
 
I welcome you to the Site of the brand new Center of Genome Informatics at St Petersburg State University. The...

Lab's news

SPBU on web site published an article about achievement of the Center and published article.

September, 27 2019 ( Friday at 2pm: Dr. Kirill Vinnikov from Hawaii University (USA) and head of the lab at the Far Eastern Federal University (Vladivostok) "Exome sequencing of non-model species"