Research Project Portals

THEODOSIUS DOBRZHANSKY CENTER FOR GENOME BIOINFORMATICS,

ST. PETERSBURG STATE UNIVERSITY & ACADEMIC UNIVERSITY RETREAT

7-8 JULY 2014, PETROVSKY HALL THE TWELVE COLLEGIA BUILDING

ABSTRACTS

AGENDA

MONDAY 7 July
9:00-9:20 Stephen J. O'Brien, Welcome and introduction
9:20-9:40 Gaik Tamazian, DC Annotating Felidae genomes
9:40-10:00 Anton Bankevich, AU Assembling short Moleculo reads into long Moleculo reads with SPAdes
10:00-10:20 Serguei Simonov, DC Evolution of the Genome Browser in Dobzhansky Center
10:20-10:40 Aleksey Komissarov, DC Aurelia aurita: Steps to assembly highly heterozygosity genomes. Advantage of PacBio long reads for assembly comples genomes regions
10:40-11:00 Sergey Nurk, AU SPAdes vs. jellyfish. Uncertain steps towards assembly of complex genomes
11:00-11:20 Coffee break
11:20-11:40 Anton Korobeynikov, AU New frontiers of genome assembly with SPAdes 3.1
11:40-12:00 Alexei Makunin, DC Assessing cat genome assembly with high-density genetic linkage map
12:00-12:20 Anton Svitin, DC GWATCH: Human genetic epidemiology in the user-friendly mode
12:20-12:40 Sergey Malov, DC Signal localization: a new way in signal discovery
12:40-13:00 Andrey Shevchenko, DC GWAS on Botswana cohort
13:00-14:30 Lunch by your own
14:30-14:50 Svetlana Limborska, DC guest Genome diversity of ethnic groups from European Russia and Sub-Arctic Transuralic region
14:50-15:10 Vladimir Brukhin, DC Whole genome C-methylation profiling in Felis catus
15:10-15:30 Ksenia Krahseninnikova, DC Application of the comparative genomics pipeline to mammalian genomes analysis
15:30-15:50 Alla Lapidus, DC/AU Educational initiatives in Bioinformatics
15:50 -16:40 Coffee break
16:40-17:00 Nikolai Vyakhi, DC/AU Education
17:00-17:20 Ekaterina, Chernyaeva, DC Genetic Diversity of the Russian Mycobacterium tuberculosis strains. Genome variation Database GMTV
17:20 -17:40 Mikhail Rotkevich, DC Genome-based Mycobacterium Tuberculosis Variation Database
19:00-22:00 DINNER: RESTAURANT "KARL & FRIEDRICH"
TUESDAY 8 July
9:40-10:00 Klaus Koepfli, DC The Genome 10K Project: An Update
10:00-10:20 Nikolay Cherkasov, DC Overview of Dobzhansky Center IT infrastructure and data
10:20-10:40 Yana Safonova, AU IgTools: toolkit analysis of antibody repertoires from sequencing data
10:40-11:00 Kira Vyatkina, AU Assessing the purity of a protein sample by means of de novo sequencing
11:00-11:40 Coffee break
11:40-12:00 Aleksey Gurevich, AU Variants QC tool
12:00-12:20 Pavel Dobrynin, DC Cheetah genome
12:20-12:40 Alexey Antonic DC Signal localization: simulations and efficiency estimations
12:40-13:00 Taras Oleksyk, DC guest Parrots of the Caribbean: from the community sponsored genome to the model of island evolution
13:00-14:30 Lunch by your own
14:30-14:50 Alexei Ryskov, DC guest Genomics of unisexual (parthenogenetic) lizard species of the genus Darevskia
14:50-15:10 Mike Rayko, DC RNA-Seq analysis of marine sponge Cinachyrella — model organism for oil and dispersant ecotoxicology
15:10-15:30 Andrey Yurchenko, DC Analysis of selection and genetic load in the cat lineage
15:30-15:50 Nesli Avgan, DC Genetic Screening of Southern Africans for Known Diseases
15:50 -16:30 Coffee break
16:30-16:50 Anna Gorbunova, DC TCGA data analysis for cancer research
16:50-17:10 Anton Logachev, DC Repeats in genome sequences
17:10-17:30 Igor Evsyukov, DC Comparative transcriptome analysis of colon cancer metastatic cell lines using RNA-sequencing
17:30-17:50 Stephen J. O'Brien, DC Genes
17:50-18:00 Stephen J. O'Brien, DC Closing

 

Picture gallery

[Best_Wordpress_Gallery id="11" gal_title="reatreatjuly2014"]

Theodosius Dobzhansky

Geneticist & Evolutionary Biologist
 
Theodosius Dobzhansky American geneticist and evolutionary biologist and a central figure in the field of evolutionary biology is recognized for...

Stephen J O'Brien

Chief Scientific Officer
 
I welcome you to the Site of the brand new Center of Genome Informatics at St Petersburg State University. The...

Vladimir Brukhin

Leading researcher, Deputy Director 
 
Vladimir Brukhin    Leading researcher, Deputy Director  Joined the Theodosius Dobzhansky Center for Genome Bioinformatics in February 2013 right after returning...

Lab's news

SPBU on web site published an article about achievement of the Center and published article.

September, 27 2019 ( Friday at 2pm: Dr. Kirill Vinnikov from Hawaii University (USA) and head of the lab at the Far Eastern Federal University (Vladivostok) "Exome sequencing of non-model species"