Home » Publications in 2012

Publications in 2012

  1. Abt B., Han C., Scheuner C., Lu M., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Mikhailova N., Huntemann M., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Brambilla E.M., Rohde M., Spring S., Gronow S., Göker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Detter J.C. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Standards in Genomic Sciences. 2012; 6(2):194-209.
  2. Anderson I., Held B., Lapidus A., Nolan M., Lucas S., Tice H., Del Rio T.G., Cheng J.F., Han C., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Brambilla E.M., Rohde M., Spring S., Göker M., Detter J.C., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Klenk H.P., Kyrpides N.C. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)). Standards in Genomic Sciences. 2012; 6(2):174-84.
  3. Anderson I., Saunders E., Lapidus A., Nolan M., Lucas S., Tice H., Del Rio T.G., Cheng J.F., Han C., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Jeffries C.D., Chang Y.J., Brambilla E.M., Rohde M., Spring S., Göker M., Detter J.C., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P Complete genome sequence of the thermophilic sulfate-reducing ocean bacteriumThermodesulfatator indicus type strain (CIR29812(T)).. Standards in Genomic Sciences.2012; 6(2):155-64.
  4. Anderson I., Tindall B.J., Rohde M., Lucas S., Han J., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Peters L., Pati A., Mikhailova N., Pagani I., Teshima H., Han C., Tapia R., Land M., Woyke T., Klenk H.P., Kyrpides N., Ivanova N. Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)). Standards in Genomic Sciences. 2012; 6(1):31-42.
  5. Andronov E., Dolnik A., Tamazyan, Pershina E., Vyatkina K., Porozov Y., Pinaev A. The evolutionary space of the bacterial 16S rRNA gene. Ver. 1.0. The 14th International Symposium on Microbial Ecology (ISME 14).2012.
  6. Bagdonavicius V., MalovV., Nikulin M. Homogeneity Tests for Related Samples Under Censoring, Communications in Statistics – Simulations and Computations 2012; 41(6): 764 – 775.
  7. Bernardi G., Wiley E.O., Mansour H., Miller M.R., Orti G., Haussler D., O’BrienJ., Ryder O.A., Venkatesh B. The Fishes of Genome 10K. Marine Genomics 7. 2012; 3-6.
  8. Borges R., Johnson , O’Brien S., Vasconcelos V., Antunes A. The role of gene duplication and unconstrained selective pressures in the melanopsin gene family evolution and vertebrate circadian rhythm regulation. Plosone Volume: 7   Issue: 12     Article Number: e52413   DOI: 10.1371/journal.pone.0052413   Published: Dec 2012
  9. Bostrom M.A., Kao W.H., Li M., Abboud H.E., Adler S.G., Iyengar S.K., Kimmel P.L., Hanson R.L., Nicholas S.B., Rasooly R.S., Sedor J.R., Coresh J., Kohn O.F., Leehey D.J., Thornley-Brown D., Bottinger E.P., Lipkowitz M.S., Meoni L.A., Klag M.J., Lu L., Hicks P.J., Langefeld C.D., Parekh R.S., Bowden D.W., Freedman B.I. OBrien SJ Family Investigation of Nephropathy and Diabetes (FIND) Research Group. Genetic association and gene-gene interaction analyses in African American dialysis patients with nondiabetic nephropathy. American Journal of Kidney Diseases. 2012; 59(2):210-21
  10. Chernyaeva, Dobrynin P., Pestova N., Matveeva N., Zhemkov V., Kozlov A. Molecular genetic analysis of Mycobacterium tuberculosis strains spread in different patient groups in St. Petersburg, Russia. European Journal Of Clinical Microbiology and Infectious Diseases 2012; 31(8): 1753-1757.
  11. Christoph G., MalovV. Asymptotic Properties of Generalized Multivariate Rank Statistics. Communications in Statistics – Theory and Methods 2012; 41(12):2133 – 2159.
  12. Copeland A., Gu W., Yasawong M., Lapidus A., Lucas S., Deshpande S., Pagani I., Tapia R., Cheng J.F., Goodwin L.A., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Pan C., Brambilla E.M., Rohde M., Tindall B.J., Sikorski J., Göker M., Detter J.C., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Woyke T. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences. 2012; 6(1):21-30.
  13. Copeland A., Zeytun A., Yassawong M., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Han C., Tapia R., Goodwin L.A., Pitluck S., Mavromatis K., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Jeffries C.D., Brambilla E.M., Rohde M., Sikorski J., Pukall R., Göker M., Detter J.C., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). Standards in Genomic Sciences. 2012; 6(2):240-50.
  14. Copeland A., Zhang X., Misra M., Lapidus A., Nolan M., Lucas S., Deshpande S., Cheng J.F., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Pan C., Jeffries C.D., Detter J.C., Brambilla E.M., Rohde M., Djao O.D., Göker M., Sikorski J., Tindall B.J., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Mavromatis K. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). Standards in Genomic Sciences. 2012; 6(2):145-54.
  15. Dolnik A., Tamazyan, Pershina E., Vyatkina K., Porozov Y., Pinaev A., Andronov E. The evolutionary space of bacterial 16S RNA gene v. 1.0 (in Russian). Sel’skokhozyaistvennaya biologiya (Agricultural biology, Russia). 2012; 5:111-120.
  16. Driscoll C.A., Sanderson E., Christie S., Luo S.J., Seidensticker J., Miquelle D., Goodrich J., Dinerstein E., Shrethsta M., Zhuralev Y., Jhala Y.V., Yadav S.P., Pikunov D.G., Darman Y., Breitenmoser U., Chestin I., Jungius H., Yamaguchi N., Pereladova O., Wildt D.E., Macdonald D.W., O’BrienJ. A Postulate for Tiger Recovery. Journal of Threatened Taxa. 2012; 4: 2637-2643.
  17. Göker M., Saunders E., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Han C., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Chang Y.J., Jeffries C.D., Brambilla E.M., Rohde M., Spring S., Detter J.C., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). Standards in Genomic Sciences. 2012; 6(2):230-9.
  18. Fernandez-Fueyo E., Ruiz-Dueñas F.J., Ferreira P., Floudas D., Hibbett D.S., Canessa P., Larrondo L.F., James T.Y., Seelenfreund D., Lobos S., Polanco R., Tello M., Honda Y., Watanabe T., Watanabe T., Ryu J.S., Kubicek C.P., Schmoll M., Gaskell J., Hammel K.E., St John F.J., Vanden Wymelenberg A., Sabat G., Splinter BonDurant S., Syed K., Yadav J.S., Doddapaneni H., Subramanian V., Lavín J.L., Oguiza J.A., Perez G., Pisabarro A.G., Ramirez L., Santoyo F., Master E., Coutinho P.M., Henrissat B., Lombard V., Magnuson J.K., Kües U., Hori C., Igarashi K., Samejima M., Held B.W., Barry K.W., LaButti K.M., Lapidus A., Lindquist E.A., Lucas S.M., Riley R., Salamov A.A., Hoffmeister D., Schwenk D., Hadar Y., Yarden O., de Vries R.P., Wiebenga A., Stenlid J., Eastwood D., Grigoriev I.V., Berka R.M., Blanchette R.A., Kersten P., Martinez A.T., Vicuna R., Cullen D. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proceedings of the National Academy of Sciences U S A. 2012; 109 (14) 5458-5463
  19. Han C., Kotsyurbenko O., Chertkov O., Held B., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Brambilla E.M., Rohde M., Spring S., Sikorski J., Göker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Detter J.C. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). Standards in Genomic Sciences. 2012; 6(1):94-103.
  20. Hostetler J.A., Onorato D.P., Bolker B.M., Johnson W.E., O’BrienJ., Jansen D., Oli M. Does genetic introgression improve female reproductive performance? A test on the endangered Florida panther. Oecologia 2012; 168(1):289-300.
  21. Huntemann M., Teshima H., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Goodwin L.A., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Pan C., Brambilla E.M., Rohde M., Spring S., Göker M., Detter J.C., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Woyke T. Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)). Standards in Genomic Sciences. 2012; 6(2):185-93.
  22. Ilina E.L., LogachovA., Laplaze L., Demchenko N.P., Pawlowski K., Demchenko K.N. Composite Cucurbita pepo plants with transgenic roots as a tool to study root development. Annals of botany, 2012; 110(2):479–89.
  23. Johnson WE, Onorato DP, Roelke ME,and O’Brien SJ. Genetic Future for Florida Panthers SCIENCE   Volume: 330   : 1744-1744   2012
  24. Kaelin C.B., Xu X., Hong L.Z., David V.A., McGowan K.A., Schmidt-Küntzel A., Roelke M.E., Pontius J., Cooper G.M., Marker H., Harper C.K., van Dyk A., Yue B., Mullikin J.C., Warren W.C., Eizirik E., O’BrienJ., Barsh G.S., Menotti-Raymond M. Specifying and sustaining pigmentation patterns in domestic and wild cats. Science 2012; 337:1536-1541.(2012)
  25. Klenk H.P., Held B., Lucas S., Lapidus A., Copeland A., Hammon N., Pitluck S., Goodwin L.A., Han C., Tapia R., Brambilla E.M., Pötter G., Land M., Ivanova N., Rohde M., Göker M., Detter J.C., Kyrpides N.C., Woyke T. Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)). Standards in Genomic Sciences. 2012; 6(2):220-9.
  26. Klenk H.P., Lu M., Lucas S., Lapidus A., Copeland A., Pitluck S., Goodwin L.A., Han C., Tapia R., Brambilla E.M., Pötter G., Land M., Ivanova N., Rohde M., Göker M., Detter J.C., Li W.J., Kyrpides N.C., Woyke T. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)). Standards in Genomic Sciences. 2012; 6(2):265-75.
  27. KozlovP., Zabezhinskiĭ M.A., Popovich I.G., Polev D.E., Shilov E.S., Muriashev B.V. Hyperplastic skin growth on the head of goldfish–comparative oncology aspects. Voprosy Onkologii. 2012; 58(3):387-93.
  28. Lee M.Y., Hyun J.Y., Lee S.J., An J., Lee E., Min M.S., Kimura J., Kawada S., Kurihara N., Luo S.J., O’BrienJ., Johnson W.E., Lee H. Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis Animal Systematics, Evolution and Diversity. 2012; 28(1): 48-53.
  29. Limou S., Delaneau O., van Manen D., An P., Sezgin E., Le Clerc S., Coulonges C., Troyer J.L., Veldink J.H., van den Berg L.H., Spadoni J.L., Taing L., Labib T., Montes M., Delfraissy J.F., Schachter F., O’BrienJ., Buchbinder S., van Natta M.L., Jabs D.A., Froguel P., Schuitemaker H., Winkler C.A., Zagury J.F. Multicohort Genomewide Association Study Reveals a New Signal of Protection Against HIV-1 Acquisition. J Infectious Diseases. 2012; 205:1155-62.
  30. Lucas S., Han J., Lapidus A., Cheng J.F., Goodwin L.A., Pitluck S., Peters L., Mikhailova N., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N.C., Ivanova N., Pagani I., Vannier P., Oger P., Bartlett D.H., Noll K.M., Woyke T., Jebbar M. Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3. Journal of Bacteriology. 2012; 194(21):5974-5.
  31. Mavromatis K., Chertkov O., Lapidus A., Nolan M., Lucas S., Tice H., Del Rio T.G., Cheng J.F., Han C., Tapia R., Bruce D., Goodwin L.A., Pitluck S., Huntemann M., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Brambilla E.M., Rohde M., Spring S., Göker M., Detter J.C., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Woyke T. Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Standards in Genomic Sciences. 2012 ;6(2):210-9.
  32. Meincke L., Copeland A., Lapidus A., Lucas S., Berry K.W., Del Rio T.G., Hammon N., Dalin E., Tice H., Pitluck S., Richardson P., Bruce D., Goodwin L., Han C., Tapia R., Detter J.C., Schmutz J., Brettin T., Larimer F., Land M., Hauser L., Kyrpides N.C., Ivanova N., Göker M., Woyke T., Wu Q.L., Pöckl M., Hahn M.W., Klenk H.P. Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)). Standards in Genomic Sciences. 2012 ;6(1):74-83.
  33. Menotti-Raymond M., David V.A., Weir B.S., O’Brien S.J. A Population Genetic Database of Cat Breeds Developed in Coordination with a Domestic Cat STR Multiplex Journal of Forensic Sciences 2012; 57:596-601.
  34. Morin E., Kohler A., Baker A.R., Foulongne-Oriol M., Lombard V., Nagy L.G., Ohm R.A., Patyshakuliyeva A., Brun A., Aerts A.L., Bailey A.M., Billette C., Coutinho P.M., Deakin G., Doddapaneni H., Floudas D., Grimwood J., Hildén K., Kües U., Labutti K.M., Lapidus A., Lindquist E.A., Lucas S.M., Murat C., Riley R.W., Salamov A.A., Schmutz J., Subramanian V., Wösten H.A., Xu J., Eastwood D.C., Foster G.D., Sonnenberg A.S., Cullen D., de Vries R.P., Lundell T., Hibbett D.S., Henrissat B., Burton K.S., Kerrigan R.W., Challen M.P., Grigoriev I.V., Martin F. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences U S A. 2012; 109(43):17501-6.
  35. Murashev B.V., Nazarenko O.V., Akulova E.B., Artemyeva A.K., Verevochkin S.V., Shaboltas A.V., Skochilov R.V., Toussova O.V., KozlovP. The High Frequency of HIV Type 1-Specific Cellular Immune Responses in Seronegative Individuals with Parenteral and/or Heterosexual HIV Type 1 Exposure. AIDS Research and Human Retroviruses. 2012; 28(12):1598-605.
  36. Neupane S., Högberg N., Alström S., Lucas S., Han J., Lapidus A., Cheng J.F., Bruce D., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C, Detter JC, Tapia R, Fiebig A., Land M., Hauser L., Kyrpides N.C., Ivanova N., Pagani I., Klenk H.P., Woyke T., Finlay R.D. Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9. Standards in Genomic Sciences. 2012; 6(1):54-62.
  37. Neupane S., Finlay R.D., Alström S., Goodwin L., Kyrpides N.C., Lucas S., Lapidus, Bruce D., Pitluck S., Peters L., Ovchinnikova G., Chertkov O., Han J., Han C., Tapia R., Detter J.C., Land M., Hauser L., Cheng J.F., Ivanova N., Pagani I., Klenk H.P., Woyke T., Högberg N. Complete genome sequence of Serratia plymuthica strain AS12. Standards in Genomic Sciences. 2012; 6(2):165-73.
  38. O’Brien J. Redefining Tiger Subspecies In Fierce Beauty: Preserving the World of Wild Cats. A Bhagavan, T Flach, B Bland, and R Duvall Mandala Publ. 2012; 324.
  39. O’BrienJ., Troyer J.L., Brown M.A., Johnson W.E., Antunes A., Roelke M.E., Pecon-Slattery J. Emerging Viruses in the Felidae: Shifting Paradigms Viruses 2012; 4(2): 236-257.
  40. O’BrienJ. Genome empowerment for the Puerto Rican parrot – Amazona vittata GigaScience 2012; 1:13-16.
  41. Padamsee M., Kumar T.K., Riley R., Binder M., Boyd A., Calvo A.M., Furukawa K., Hesse C., Hohmann S., James T.Y., LaButti K., Lapidus A., Lindquist E., Lucas S., Miller K., Shantappa S., Grigoriev I.V., Hibbett D.S., McLaughlin D.J., Spatafora J.W., Aime M.C. The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction. Fungal Genetics and Biology. 2012; 49(3):217-26.
  42. Pershina E., Tamazian G., Dolnik A., Vyatkina K., Porozov Y., Pinaev A., Andronov E. . Study of saline solt microbial coenosis structure using efficient sequencing (in Russian). Ekologicheskaya genetika (Ecological Genetics, Russia). 2012; X,(2): 32–39.
  43. Pester M., Brambilla E., Alazard D., Rattei T., Weinmaier T., Han J., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C.S., Tapia R., Land M.L., Hauser L., Kyrpides N.C., Ivanova N.N., Pagani I., Huntmann M., Wei C.L., Davenport K.W., Daligault H., Chain P.S., Chen A., Mavromatis K., Markowitz V., Szeto E., Mikhailova N., Pati A., Wagner M., Woyke T., Ollivier B., Klenk H.P., Spring S., Loy A. Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T. Journal of Bacteriology. 2012; 194(22):6300-1.
  44. Philip, S, Machado JP, Maldonado E, Vasconcelos V, O’Brien SJ, Johnson WE, Antunes A. Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ. Mol Biol Evol. 2012 29(12):3887-98.
  45. Roberts J.L., Buckley R.H., Luo B., Pei J., Lapidus A., Peri S., Wei Q., Shin J., Parrott R.E., Dunbrack R.L. Jr, Testa J.R., Zhong X.P., Wiest D.L. CD45-deficient severe combined immunodeficiency caused by uniparental disomy. Proceedings of the National Academy of SciencesU S A. 2012; 109(26):10456-61.
  46. Schneider, A , David, VA; Johnson, WE ; O’Brien, SJ; Barsh, GS; Menotti-Raymond, M, Eizirik, E. >How the Leopard Hides Its Spots: ASIP Mutations and Melanism in Wild Cats PLOS ONE  Volume: 7   Issue: 12     Article Number: e50386   DOI: 10.1371/journal.pone.0050386    2012
  47. Siddaramappa S., Challacombe J.F., Delano S.F., Green L.D., Daligault H., Bruce D., Detter C., Tapia R., Han S., Goodwin L., Han J., Woyke T., Pitluck S., Pennacchio L., Nolan M., Land M., Chang Y.J., Kyrpides N.C., Ovchinnikova G., Hauser L., Lapidus A., Yan J., Bowman K.S., da Costa M.S., Rainey F.A., Moe W.M. Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains. Standards in Genomic Sciences. 2012; 6(2):251-64.
  48. Sunagar K., Johnson W.E., O’Brien S.J., Vasconcelos V., Antunes A. Evolution of CRISPs associated with toxicoferan-reptilian venom and mammalian reproduction. Molecular Biology and Evolution. 2012; 29:1807-1822
  49. Susanti D., Johnson E.F., Rodriguez J.R., Anderson I., Perevalova A.A., Kyrpides N., Lucas S., Han J., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Mavrommatis K., Peters L., Land M.L., Hauser L., Gopalan V., Chan P.P., Lowe T.M., Atomi H., Bonch-Osmolovskaya E.A., Woyke T., Mukhopadhyay B. Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia. Journal of Bacteriology. 2012; 194(20):5703-4.
  50. Suzuki H., Macdonald J., Syed K., Salamov A., Hori C., Aerts A., Henrissat B., Wiebenga A., Vankuyk P.A., Barry K., Lindquist E., Labutti K., Lapidus A., Lucas S., Coutinho P., Gong Y., Samejima M., Mahadevan R., Abou-Zaid M., de Vries R.P., Igarashi K., Yadav J.S., Grigoriev I.V., Master E.R. Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. BMC Genomics. 2012; 13:444.
  51. Tang M., Lautenberger J.A., Gao X., Sezgin E., Hendrickson S.L., Troyer J.L., David V.A., Guan L., Mcintosh C.E., Guo X., Zheng Y., Liao J., Deng H., Malasky M., Kessing B., Winkler C.A., Carrington M., Guy de´ T, Zeng Y., O’Brien S.J. The Principal Genetic Determinants for Nasopharyngeal Carcinoma in China Involve the HLA Class I Antigen Recognition Groove PLOS Genetics: 2012; 8(11):e1003103.
  52. Tamazian G. A variation of the pure adaptive random search // Proceedings of the 3rd International Conference on Optimization Methods and Software. 2012:93.
  53. Troyer J.L., Roelke M.E., Jespersen J.M., Baggett N., Buckley-Beason V., MacNulty D., Craft M., Packer C., Pecon-Slattery J., O’Brien S.J..FIV diversity: FIVPle subtype composition may influence disease outcome in African lions: Veterinary Immunology And Immunopathology- SI 2012; 143: 338-346.
  54. Wester C.W., Eden S.K., Shepherd B.E., Bussmann H., Novitsky V., Samuels D.C., Hendrickson S.L., Winkler C.A., O’Brien S.J., Essex M., D’Aquila R.T., Degruttola V., Marlink R.G. Risk Factors for Symptomatic Hyperlactatemia and Lactic Acidosis Among Combination Antiretroviral Therapy-Treated Adults in Botswana: Results from a Clinical Trial. AIDS Research and Human Retroviruses. 2012; 28:759-765.
  55. de Wit P.J.G.M., Van der Burgt A., Okmen B., Stergiopoulos I., Abd-.‐Elsalam K.A., Aerts A.L., Bahkali A.H., Beenen H.G., Chettri P., Cox M.P., Datema E., de Vries R.P., Dhillon B., Ganley A.R., Griffiths S.A., Guo Y., Hamelin R.C., Henrissat B., Kabir M.S., Jashni M.K., Kema G., Klaubauf S., Lapidus A., Levasseur A., Lindquist E., Mehrabi R., Ohm R.A., Owen T.J., Salamov A., Schwelm A., Schijlen E., Sun H., Van den Burg H.A., Van Ham R.C.H.J., Zhang S., Goodwin S.B., Grigoriev I.V., Collemare J., Bradshaw R.E.The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothisstroma Septosporum Reveal adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry. PLOS Genetics. 2012;11.
  56. Wong P., Wiley E., Johnson W, Ryder O., O’Brien S., Haussler D., Koepfli K., Houck M., Perelman P., Mastromonaco G., Bentley A., Venkatesh B., Zhang Y., Murphy R., Genome 10 K Community of Scientists Tissue sampling and standards for vertebrate genomics GigaScience 2012;1:8-20.
  57. Zhan W., Hansen N.B., Shaboltas A.V., Skochilov R.V., Kozlov A.P., Krasnoselskikh T.V., Abdala N. Partner violence perpetration and victimization and HIV risk behaviors in St. Petersburg, Russia. Journal of Traumatic Stress. 2012; 25(1):86-93.
  58. Zhan W., Krasnoselskikh T.V., Golovanov S., Kozlov A.P., Abdala N. Gap between consecutive sexual partnerships and sexually transmitted infections among STI clinic patients in St Petersburg, Russia. AIDS and Behavior. 2012;16(2):334-9.

 

  1. Zhan W., Shaboltas A.V., Skochilov R.V., Kozlov A.P., Krasnoselskikh T.V., Abdala N. Depressive symptoms and unprotected sex in St. Petersburg, Russia. Journal of Psychosomatic Research. 2012; 72(5):371-5.