Andrei Shevchenko

Position:
ashevchenko

I am working in the Theodosius Dobzhansky Center for Genome Bioinformatics SPSU in a field of population genetics, human and animal genetics, HIV/AIDS from 2012.

Research Experience:

2010-2012 – junior research fellow, the Biomedical Center, St. Petersburg, Russia.
2009-2010 – junior research fellow, Laboratory of Molecular Virology, Institute of Highly Pure Biopreparations, St. Petersburg, Russia.
2007-2008 – trainee, the Biomedical Center, St. Petersburg, Russia.
2006-2007 – trainee, department of advanced medical biological technologies, Military Medical Academy, St. Petersburg, Russia.

Education:

2009– M.S., Department of Microbiology, St. Petersburg State University, St. Petersburg, Russia. Diploma thesis: “Analysis of intrapatient genetic diversity of HIV viral population in acute HIV infection”.
2007 – B.S., Department of Microbiology, St. Petersburg State University, St. Petersburg, Russia. Diploma thesis: “Epitope mapping of Treponema pallidum p17 antigen using synthetic peptides”.

List of publications:

1. Xie W, Agniel D, Shevchenko A, Malov SV, Svitin A, Cherkasov N, Baum MK, Campa A, Gaseitsiwe S, Bussmann H, Makhema J, Marlink RG, Novitsky V, Lee TH, Cai T, O’Brien SJ, Essex M. Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa. AIDS Res Hum Retroviruses 2017 Jan 28. doi: 10.1089/AID.2016.0017.

2. Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, Sezgin E, Van Natta M, Harrigan PR, Brumme ZL, O’Brien SJ. (2014). GWATCH: a web platform for automated gene association discovery analysis. GigaScience, 3, 18. doi:10.1186/2047-217X- 3-18

3. Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alexey Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus- Peter Koepfli, Joan Pontius, Carlos A Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belen Lorente-Galdos, Can Alkan, Tomas Marques-Bonet, Marylin Menotti-Raymond, Victor A David, Kristina Narfström and Stephen J O’Brien. Annotated features of domestic cat – Felis catus genome. 
GigaScience. 2014, 3:13 doi:10.1186/2047-217X-3-13.

4. Sergey V. Malov, Andrey K. Shevchenko, Stephen J. O’Brien. Genome Associations Discovery. Part 2: Multiple Testing Problem, Computer Tools and Applications. Computer Methods in Education. ISSN: 2071-2340, 2013,-No6,-p.3-17.

5. Sergey V. Malov, Andrey K. Shevchenko, Stephen J. O’Brien. Genome Associations Discovery. Part 1: Statistical Method. Computer Methods in Education. ISSN: 2077-7647, 2013,-No5,-p17-32.

6. Shevchenko A.K., Verevochkin S.V., Masharsky A.E., Dukhovlinova E.N., Olshansky A.Ya., Mazus A.I., Kozlov A.P. The search of acute and early HIV infection cases. Abstracts of 19-th International Conference “AIDS, cancer and public health”, 2010, St. Petersburg, Russia. Russian Journal of AIDS, cancer and public health.-2010.-V.14.-No1.-p.40.

7. Verevochkin S.V., Gagarina S.Yu., Shevchenko A.K., Skochilov R.V., Shaboltas A.V., Toussova O.V., Kozlov A.P. Prevalence and incidence of HIV infection among IDUs in St. Petersburg, Russia. Abstracts of 19-th International Conference “AIDS, cancer and public health”, 2010, St. Petersburg, Russia. Russian Journal of AIDS, cancer and public health.- 2010.-V.14.-No1.-p.57-58